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| doku:mpi [2015/12/09 11:30] – [MPI environment] ir | doku:mpi [2021/09/14 13:27] – [Process Pinning with MPI] goldenberg | ||
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| Different MPI implementations can be chosen via the command " | Different MPI implementations can be chosen via the command " | ||
| - | ** We recommend using the latest Intel MPI (currently | + | ** We recommend using the latest Intel MPI (currently |
| On both clusters other MPI Versions (OpenMPI and MVAPICH2) are also available. | On both clusters other MPI Versions (OpenMPI and MVAPICH2) are also available. | ||
| - | ==== Process Pinning with MPI ==== | ||
| - | Most MPI implementations allow a pinning of the MPI processes to specific CPU cores if needed. | ||
| - | |||
| - | |||
| - | Numbering of the cores on a VSC-1 node with 8 cores: | ||
| - | < | ||
| - | CPU0 CORE0 | ||
| - | CPU0 CORE1 | ||
| - | CPU0 CORE2 | ||
| - | CPU0 CORE3 | ||
| - | |||
| - | CPU1 CORE4 | ||
| - | CPU1 CORE5 | ||
| - | CPU1 CORE6 | ||
| - | CPU1 CORE7 | ||
| - | </ | ||
| - | |||
| - | Numbering of the cores on a VSC-2 node with 16 cores: | ||
| - | < | ||
| - | CPU0 CORE0 | ||
| - | CPU0 CORE1 | ||
| - | CPU0 CORE2 | ||
| - | CPU0 CORE3 | ||
| - | CPU0 CORE4 | ||
| - | CPU0 CORE5 | ||
| - | CPU0 CORE6 | ||
| - | CPU0 CORE7 | ||
| - | |||
| - | CPU1 CORE8 | ||
| - | CPU1 CORE9 | ||
| - | CPU1 CORE10 | ||
| - | CPU1 CORE11 | ||
| - | CPU1 CORE12 | ||
| - | CPU1 CORE13 | ||
| - | CPU1 CORE14 | ||
| - | CPU1 CORE15 | ||
| - | |||
| - | </ | ||
| - | |||
| - | |||
| - | === Pinning to cores 0,1,2,4,6 === | ||
| - | |||
| - | Mvapich: | ||
| - | < | ||
| - | mpirun | ||
| - | </ | ||
| - | |||
| - | |||
| - | Intel MPI: | ||
| - | < | ||
| - | export I_MPI_PIN_PROCESSOR_LIST=0-2, | ||
| - | mpirun -machinefile $TMPDIR/ | ||
| - | </ | ||