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| Both sides previous revision Previous revision Next revision | Previous revision Next revisionBoth sides next revision | ||
| doku:slurm [2023/03/14 12:34] – [Job submission] goldenberg | doku:slurm [2023/03/14 12:52] – [Licenses] goldenberg | ||
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| - | ====A word on srun and mpirun:==== | ||
| - | Currently (27th March 2015), **srun** only works when the application uses **intel mpi** and is compiled with the **intel compiler**. We will provide compatible versions of MVAPICH2 and OpenMPI in the near future. | ||
| - | At the moment, it is recommended to use **mpirun** in case of MVAPICH2 and OpenMPI. | ||
| Line 157: | Line 153: | ||
| #SBATCH -J chk | #SBATCH -J chk | ||
| #SBATCH -N 4 | #SBATCH -N 4 | ||
| - | #SBATCH --ntasks-per-node=16 | + | #SBATCH --ntasks-per-node=48 |
| #SBATCH --ntasks-per-core=1 | #SBATCH --ntasks-per-core=1 | ||
| Line 163: | Line 159: | ||
| scontrol show hostnames $SLURM_NODELIST | scontrol show hostnames $SLURM_NODELIST | ||
| - | srun -l -N2 -r0 -n32 job1.scrpt & | + | srun -l -N2 -r0 -n96 job1.scrpt & |
| - | srun -l -N2 -r2 -n32 job2.scrpt & | + | srun -l -N2 -r2 -n96 job2.scrpt & |
| wait | wait | ||
| - | srun -l -N2 -r2 -n32 job3.scrpt & | + | srun -l -N2 -r2 -n96 job3.scrpt & |
| - | srun -l -N2 -r0 -n32 job4.scrpt & | + | srun -l -N2 -r0 -n96 job4.scrpt & |
| wait | wait | ||
| Line 276: | Line 272: | ||
| #SBATCH -J par # job name | #SBATCH -J par # job name | ||
| #SBATCH -N 2 # number of nodes=2 | #SBATCH -N 2 # number of nodes=2 | ||
| - | #SBATCH --ntasks-per-node=16 # uses all cpus of one node | + | #SBATCH --ntasks-per-node=48 # uses all cpus of one node |
| #SBATCH --ntasks-per-core=1 | #SBATCH --ntasks-per-core=1 | ||
| #SBATCH --threads-per-core=1 | #SBATCH --threads-per-core=1 | ||
| Line 286: | Line 282: | ||
| rm machines_tmp | rm machines_tmp | ||
| - | tasks_per_node=16 # change number accordingly | + | tasks_per_node=48 # change number accordingly |
| nodes=2 | nodes=2 | ||
| for ((line=1; line< | for ((line=1; line< | ||
| Line 338: | Line 334: | ||
| - continue at 2. for further dependent jobs | - continue at 2. for further dependent jobs | ||
| - | ===== Licenses ===== | ||
| - | Software, that uses a license server, has to be specified upon job submission. A list of all available licensed software for your user can be shown by using the command: | ||
| - | |||
| - | < | ||
| - | slic | ||
| - | </ | ||
| - | |||
| - | Within the job script add the flags as shown with ' | ||
| - | |||
| - | < | ||
| - | #SBATCH -L matlab@vsc, | ||
| - | </ | ||
| ===== Prolog Error Codes ===== | ===== Prolog Error Codes ===== | ||