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doku:smrtanalysis [2017/01/31 11:19] – markus | doku:smrtanalysis [2017/01/31 11:39] – markus | ||
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==== SMRTAnalysis ==== | ==== SMRTAnalysis ==== | ||
=== installation === | === installation === | ||
- | + | - add SMRTAnalysis_HOME to your .bashrc:< | |
- | Run the installer, use default optionx except for the points below: | + | source ~/ |
- | < | + | |
- | start_dir=`pwd` | + | cd $SMRTAnalysis_HOME |
./ | ./ | ||
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#cores used: 16 | #cores used: 16 | ||
</ | </ | ||
- | + | - Reset MYSQL password: < | |
- | Reset MYSQL password: | + | cd $SMRTAnalysis_HOME |
- | < | + | |
./ | ./ | ||
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH: | export LD_LIBRARY_PATH=$LD_LIBRARY_PATH: | ||
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</ | </ | ||
- | + | - edit ' | |
- | edit ' | + | |
- | < | + | |
[client] | [client] | ||
user = root | user = root | ||
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</ | </ | ||
- | Set SMRTAnalysis_HOME: | ||
- | < | ||
- | export SMRTAnalysis_HOME=/ | ||
- | </ | ||
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- allocate a node: < | - allocate a node: < | ||
- | - after allocation the environment variable ' | + | - start server on allocated: < |
+ | - create SSH tunnel | ||
+ | * on the login node: < | ||
+ | * on your local machine: paste the command from the previous step and create the SSH tunnel | ||
+ | - navigate | ||
+ | - when finished stop the server | ||