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doku:vsc3_queue [2021/05/14 13:44] – [Queue | Partition setup on VSC-3] goldenberg | doku:vsc3_queue [2022/06/23 12:11] – [Hardware types] msiegel | ||
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On VSC-3+, the type of hardware and the quality of service (QOS) where the jobs run on may be selected. Nodes of the same type of hardware are grouped to partitions, the QOS defines the maximum run time of a job and the number and type of allocable nodes. | On VSC-3+, the type of hardware and the quality of service (QOS) where the jobs run on may be selected. Nodes of the same type of hardware are grouped to partitions, the QOS defines the maximum run time of a job and the number and type of allocable nodes. | ||
===== Hardware types ===== | ===== Hardware types ===== | ||
- | Three different types of compute nodes, nodes with 64 GB, and 256 GB, GPU nodes, and | + | Three different types of compute nodes, nodes with 64 GB and 256 GB, GPU nodes and |
- | bioinformatics nodes (ver high memory) are available. | + | bioinformatics nodes (very high memory) are available. |
On VSC-3+, the hardware is grouped into so-called < | On VSC-3+, the hardware is grouped into so-called < | ||
^partition name^ description^ | ^partition name^ description^ | ||
- | | | | | ||
|vsc3plus_0064 | default, nodes with 64 GB of memory | | |vsc3plus_0064 | default, nodes with 64 GB of memory | | ||
|vsc3plus_0256 | nodes with 256 GB of memory| | |vsc3plus_0256 | nodes with 256 GB of memory| | ||
|gpu_xxxx | |gpu_xxxx | ||
|binf | Bioinformatics nodes | | |binf | Bioinformatics nodes | | ||
+ | |jupyter| reserved for the JupyterHub | | ||
+ | |||
+ | For the specific GPU partitions, see [[doku: | ||
+ | |||
+ | The partitions of the oil-cooled nodes (normal_0064, | ||
===== Quality of service (QOS) ===== | ===== Quality of service (QOS) ===== | ||
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sacctmgr show user `id -u` withassoc format=user, | sacctmgr show user `id -u` withassoc format=user, | ||
</ | </ | ||
+ | The default QOS and all QOSs usable are also shown right after login. | ||
- | Have a look on the < | + | Generally, it can be distinguished in QOS defined |
+ | |||
+ | The < | ||
==== Run time limits ==== | ==== Run time limits ==== | ||
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^ The QOS's hard run time limits ^ | | ^ The QOS's hard run time limits ^ | | ||
| | | | | | | | ||
- | | normal_0064 | + | | vsc3plus_0064 |
- | | idle_0064 | + | | idle_0064 / idle_0256 |
- | | private queues | + | | GPU queues gpu_..... |
- | | devel queue (up to 10 nodes available) | + | | normal_binf |
+ | | private queues | ||
+ | | devel_0064 | ||
The QOS's run time limits can also be requested via the command | The QOS's run time limits can also be requested via the command | ||
< | < | ||
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^QOS name ^ gives access to partition ^description^ | ^QOS name ^ gives access to partition ^description^ | ||
| | | | | | | | ||
- | |normal_0064 | + | |vsc3plus_0064 |
- | |normal_0128 | + | |vsc3plus_0256 |
- | |normal_0256 | + | |gpu_.... |
- | |devel_0128 | + | |normal_binf | binf| | |
+ | |devel_0064 | ||
== examples == | == examples == | ||
< | < | ||
- | #SBATCH --partition=mem_0128 | + | #SBATCH --partition=vsc3plus_0064 |
- | #SBATCH --qos=normal_0128 | + | #SBATCH --qos=vsc3plus_0064 |
#SBATCH --account=p7xxxx | #SBATCH --account=p7xxxx | ||
</ | </ | ||
< | < | ||
- | #SBATCH --partition=mem_0128 | + | #SBATCH --partition=gpu_a40dual |
- | #SBATCH --qos=devel_0128 | + | #SBATCH --qos=gpu_a40dual |
#SBATCH --account=p7xxxx | #SBATCH --account=p7xxxx | ||
</ | </ | ||
* Note that partition, qos, and account have to fit together. | * Note that partition, qos, and account have to fit together. | ||
* If the account is not given, the default account ('' | * If the account is not given, the default account ('' | ||
- | * If partition and qos are not given, default values are mem_0064 and normal_0064. | + | * If partition and qos are not given, default values are vsc3plus_0064 for both. |
=== private nodes projects === | === private nodes projects === | ||
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< | < | ||
- | #SBATCH --partition=mem_xxxx | + | #SBATCH --partition=vsc3plus_xxxx |
#SBATCH --qos=p7xxx_xxxx | #SBATCH --qos=p7xxx_xxxx | ||
#SBATCH --account=p7xxxx | #SBATCH --account=p7xxxx |