Table of Contents

Single-particle IMage Processing Linux Engine

simple2

compilation works only with gcc4.8.2 / gfortran4.8.2

.bashrc:

PATH=/opt/sw/gcc/4.8.2/bin:$PATH
LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/sw/gcc/4.8.2/lib64

compilation (use fftw that comes with simple):

export FFTWLIB=/home/lv70172/blaas/software/simple2/fftw/lib
./simple_compile.pl prg=all_fast mac=no compiler=gfortran

running:

simple_rndrec stk=stack_for_simple.spi box=240 smpd=1.89 nthr=4

simple2 parallel

basic parallelization, ie. single tasks are calculated simultanously on several nodes

script to run the different steps (should be done via a cronjob)

run_simple_vsc.sh

adjusted distr_simple_prime_vsc2.pl:

distr_simple_prime_vsc2.pl