This version is outdated by a newer approved version.This version (2017/01/31 10:37) is a draft.
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SMRTAnalysis
installation
Run the installer, use default optionx except for the points below:
start_dir=`pwd` ./smrtanalysis_2.3.0.140936.run #DNS name: localhost #TOMCAT port: 8090 (8080 in use by cmd) #TMP directory [/tmp/smrtanalysis] ??? #job management system: NONE #cores used: 16
Reset MYSQL password:
./smrtanalysis/admin/bin/smrtportald-initd start export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${start_dir}/smrtanalysis/install/smrtanalysis_2.3.0.140936/redist/mysql-5.1.73/lib/mysql/ ${start_dir}/smrtanalysis/install/smrtanalysis_2.3.0.140936/redist/mysql/bin/mysqladmin -u root -S /tmp/mysql_53306.sock password 'asdf'
running
- allocate a node:
salloc -p mem_0128 --qos=normal_0128
- after allocation the environment variable 'SLURM_NODELIST' contains the node to run SMRTAnalysis on: