This version (2022/06/20 09:01) was approved by msiegel.

COMSOL 5.2a

 module load COMSOL/5.2a

You can use only one node in this case. Create a job file called job_smp.sh:

/opt/ohpc/pub/examples/slurm/mul/comsol

#!/bin/bash
#
#SBATCH -J comsol
#SBATCH -N 1
#SBATCH -o job.%j.out
#SBATCH -p E5-2690v4
#SBATCH -q E5-2690v4-batch
#SBATCH --ntasks-per-node=28
#SBATCH --threads-per-core=1
#SBATCH --time=04:00:00
#SBATCH --mem=16G

# Details of your input and output files
INPUTFILE=micromixer_cluster.mph
OUTPUTFILE=micromixer.out

# Load our comsol module
module purge
module load COMSOL/5.2a

# create tmpdir 
TMPDIR="/tmp1/comsol"
mkdir -p $TMPDIR

## Now, run COMSOL in batch mode with the input and output detailed above.
comsol batch -np $SLURM_NTASKS -inputfile $INPUTFILE -outputfile $OUTPUTFILE -tmpdir $TMPDIR

You can use more than one node in this case. Create a job file called job_mpi.sh:

/opt/ohpc/pub/examples/slurm/mul/comsol

#!/bin/bash
#
#SBATCH -J comsol
#SBATCH -N 2
#SBATCH -o job.%j.out
#SBATCH -p E5-2690v4
#SBATCH -q E5-2690v4-batch
#SBATCH --ntasks-per-node=28
#SBATCH --threads-per-core=1
#SBATCH --time=04:00:00
#SBATCH --mem=16G

# Details of your input and output files
INPUTFILE=micromixer_cluster.mph
OUTPUTFILE=micromixer.out

# Load our comsol module
module purge
module load COMSOL/5.2a
module load intel-mpi/2018

# create tmpdir 
TMPDIR="/tmp1/comsol"
mkdir -p $TMPDIR

## Now, run COMSOL in batch mode with the input and output detailed above.
comsol -clustersimple batch \
-inputfile $INPUTFILE \
-outputfile $OUTPUTFILE \
-tmpdir $TMPDIR \
-mpiroot $MPIROOT -mpi intel -mpifabrics shm:dapl

sbatch job_xyz.sh

To continue your calculation from the last saved state on use the options:

-recover -continue
  • doku/comsol52.txt
  • Last modified: 2021/10/22 09:02
  • by ir