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Running multiple mpi jobs concurrently

Sample job script to run two MPI tasks within one job script concurrently:

With srun:
#!/bin/bash
#SBATCH -J test
#SBATCH -N 1
#SBATCH --ntasks-per-core=1
#SBATCH --ntasks-per-node=2

export SLURM_STEP_GRES=none

module load intel/18 intel-mpi/2018

for i in 0 8
do
  j=$(($i+1))
  srun -n 2 --cpu_bind=map_cpu:$i,$j ./hello_world_intelmpi2018 &
done
wait

exit 0
With mpirun (Intel MPI):
#!/bin/bash
#SBATCH -J test
#SBATCH -N 1
#SBATCH --ntasks-per-core=1
#SBATCH --ntasks-per-node=2

export SLURM_STEP_GRES=none

module load intel/18 intel-mpi/2018

for i in 0 8
do
  j=$(($i+1))
  mpirun -env I_MPI_PIN_PROCESSOR_LIST $i,$j -np 2 ./hello_world_intelmpi2018 &
done
wait

exit 0

You can download the C code example here: hello_world.c

  • doku/multimpi.1552395064.txt.gz
  • Last modified: 2019/03/12 12:51
  • by jz