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--- doku:python [2023/02/23 11:11] – [Jupyterhub] katrin
+++ doku:python [2023/02/23 11:29] – [SLURM] katrin
@@ Line 102: / Line 102: @@
 ===== SLURM =====
-When using slurm it should be enough to include the following code in your slurm batch script. See [[doku:slurm]] for detailed information about slurm in general.
+See the following minimal example to use conda with slurm in your batch script (the example assumes that you have the conda init code in your ''~/.bashrc'' file - see below for an alternative). See [[doku:slurm]] for detailed information about slurm in general.
 <code bash>
+#!/bin/bash --login
+#SBATCH --job-name=slurm_conda_example
+#SBATCH --time 00-00:05:00
+#SBATCH --ntasks=2
+#SBATCH --mem=2GB
 spack load miniconda3@4.12.0
 conda activate myenv
-<code>
+which python
+python --version
+</code>
+Please note the ''--login'' flag to the shell above. This way the shell in the job will be a login shell and thus load your ''~/.bashrc'' file before executing the script code. If cannot or don't want do this you can also just extract the conda init code from your bashrc file and put it into a separate file (e.g. ''conda-init.sh'') that is placed in your home directory and source this file manually in the batch script.
+See the following example:
+<code bash>
+#!/bin/bash
+#SBATCH --job-name=slurm_conda_example
+#SBATCH --time 00-00:05:00
+#SBATCH --ntasks=2
+#SBATCH --mem=2GB
+spack load miniconda3@4.12.0
+source ~/conda-init.sh
+conda activate myenv
+which python
+python --version
+</code>
 ===== JupyterHub =====