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--- doku:relion [2014/02/05 07:51] – external edit 127.0.0.1
+++ doku:relion [2014/10/22 10:00] (current) – [Version 1.3] markus
@@ Line 294: / Line 294: @@
 Settings in the GUI:
   * queue name: mpich
+==== Version 1.3 ====
+Installation Procedure with Intelcompilers and Intelmpi:
+<code>
+umask 0022
+my_src=/opt/src/relion/relion-1.3
+my_inst=INSTALL_vsc.sh
+my_prefix=/opt/sw/relion/1.3-intel/
+cp_dirs="bin include lib share"
+cd $my_src
+sed '3 i export MPICXX=mpiicpc ; export CC=icc; export CXX=icpc ' INSTALL.sh > $my_inst
+bash $my_inst
+mkdir -p $my_prefix
+for d in $cp_dirs
+do
+	cp -r $my_src/$d $my_prefix
+done
+mkdir -p $my_prefix/gui
+echo '
+#!/bin/bash
+#$ -pe XXXqueueXXX XXXmpinodesXXX
+#$ -e XXXerrfileXXX
+#$ -o XXXoutfileXXX
+#$ -cwd
+#$ -V
+#needed on VSC-1:
+#export IPATH_NO_CPUAFFINITY=1
+mpirun -machinefile $TMPDIR/machines  -np XXXmpinodesXXX  XXXcommandXXX
+'> $my_prefix/gui/qsub.bash
+</code>
+Add this to .bashrc:
+<code>
+RELION_PREFIX=/opt/sw/relion/1.3-intel
+export PATH=${RELION_PREFIX}/bin:$PATH
+export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${RELION_PREFIX}/lib
+export RELION_QSUB_TEMPLATE="$RELION_PREFIX/gui/qsub.bash"
+export RELION_CTFFIND3_EXECUTABLE="/opt/sw/ctf/ctffind3.exe"
+</code>