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doku:relion [2014/10/22 09:38] – [relion 1.3] markusdoku:relion [2014/10/22 10:00] (current) – [Version 1.3] markus
Line 314: Line 314:
  cp -r $my_src/$d $my_prefix  cp -r $my_src/$d $my_prefix
 done done
 +
 +mkdir -p $my_prefix/gui
 +echo '
 +#!/bin/bash
 +#$ -pe XXXqueueXXX XXXmpinodesXXX
 +#$ -e XXXerrfileXXX
 +#$ -o XXXoutfileXXX
 +#$ -cwd
 +#$ -V
 +
 +#needed on VSC-1:
 +#export IPATH_NO_CPUAFFINITY=1
 +
 +mpirun -machinefile $TMPDIR/machines  -np XXXmpinodesXXX  XXXcommandXXX
 +'> $my_prefix/gui/qsub.bash
 +
 +
 </code> </code>
  
 Add this to .bashrc: Add this to .bashrc:
 <code> <code>
-export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/sw/relion/1.3-intel/lib+RELION_PREFIX=/opt/sw/relion/1.3-intel 
 +export PATH=${RELION_PREFIX}/bin:$PATH 
 +export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${RELION_PREFIX}/lib 
 +export RELION_QSUB_TEMPLATE="$RELION_PREFIX/gui/qsub.bash" 
 +export RELION_CTFFIND3_EXECUTABLE="/opt/sw/ctf/ctffind3.exe" 
 </code> </code>
  
  • doku/relion.1413970700.txt.gz
  • Last modified: 2014/10/22 09:38
  • by markus