doku:simple [VSC Wiki]

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==== Single-particle IMage Processing Linux Engine ====

=== simple2 ===

compilation works only with gcc4.8.2 / gfortran4.8.2 

.bashrc:
<code>
PATH=/opt/sw/gcc/4.8.2/bin:$PATH
LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/sw/gcc/4.8.2/lib64
</code>

compilation (use fftw that comes with simple):
<code>
export FFTWLIB=/home/lv70172/blaas/software/simple2/fftw/lib
./simple_compile.pl prg=all_fast mac=no compiler=gfortran
</code>

running:
<code>
simple_rndrec stk=stack_for_simple.spi box=240 smpd=1.89 nthr=4
</code>

=== simple2 parallel ===

basic parallelization, ie. single tasks are calculated simultanously on several nodes


script to run the different steps (should be done via a cronjob)

{{:doku:simple:run_simple_vsc.sh}}



adjusted distr_simple_prime_vsc2.pl:

{{:doku:simple:distr_simple_prime_vsc2.pl}}