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doku:smrtanalysis [2017/01/31 11:38] – markusdoku:smrtanalysis [2017/01/31 11:40] – markus
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 cd $SMRTAnalysis_HOME cd $SMRTAnalysis_HOME
 ./smrtanalysis/admin/bin/smrtportald-initd start ./smrtanalysis/admin/bin/smrtportald-initd start
-export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${start_dir}/smrtanalysis/install/smrtanalysis_2.3.0.140936/redist/mysql-5.1.73/lib/mysql/ +export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${SMRTAnalysis_HOME}/smrtanalysis/install/smrtanalysis_2.3.0.140936/redist/mysql-5.1.73/lib/mysql/ 
-${start_dir}/smrtanalysis/install/smrtanalysis_2.3.0.140936/redist/mysql/bin/mysqladmin -u root -S /tmp/mysql_53306.sock password 'asdf'+${SMRTAnalysis_HOME}/smrtanalysis/install/smrtanalysis_2.3.0.140936/redist/mysql/bin/mysqladmin -u root -S /tmp/mysql_53306.sock password 'asdf'
  
 </code> </code>
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       * on your local machine: paste the command from the previous step and create the SSH tunnel       * on your local machine: paste the command from the previous step and create the SSH tunnel
   - navigate to http://localhost:8090/ in your local browser   - navigate to http://localhost:8090/ in your local browser
 +  - when finished stop the server on the compute node: <code>srun $SMRTAnalysis_HOME/smrtanalysis/admin/bin/smrtportald-initd stop</code>
  
  
  • doku/smrtanalysis.txt
  • Last modified: 2017/01/31 12:14
  • by markus