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doku:vsc1quickstart [2014/08/08 09:05] – [Submit your job:] jzdoku:vsc1quickstart [Unknown date] (current) – external edit (Unknown date) 127.0.0.1
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 ===== Quick Start ===== ===== Quick Start =====
 +
 +[[doku:win2vsc|How to connect from Windows?]]
 ==== Login ==== ==== Login ====
  
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     </code>       </code>  
   - (Re-)Compile your application. Please use the latest "Intel" MPI-Environment as described in [[doku:mpi|MPI Environment]].   - (Re-)Compile your application. Please use the latest "Intel" MPI-Environment as described in [[doku:mpi|MPI Environment]].
 +
  
 ==== The job script ==== ==== The job script ====
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   - as parallel single core job (no MPI) on parallel cores (see also [[doku:sequential-codes|Sequential code]])   - as parallel single core job (no MPI) on parallel cores (see also [[doku:sequential-codes|Sequential code]])
   - as MPI-enabled application <code>   - as MPI-enabled application <code>
-mpirun  -m $TMPDIR/machines -np $NSLOTS <executable></code> +mpirun  -m $TMPDIR/machines -np $NSLOTS <executable></code>"<executable>" is substituted by the path of the MPI-enabled application. 
 +Please note that the particular options to mpirun depend on the MPI version that you use. Current IntelMPI versions, for example, require the option ''-machinefile'' instead of ''-m'':<code>mpirun  -machinefile $TMPDIR/machines -np $NSLOTS <executable></code> 
 +Please always check for the correct options with<code>mpirun -help</code>
                                
-"<executable>" is substituted by the path of the MPI-enabled application.+
  
  
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 #$ -l h_rt=03:00:00 #$ -l h_rt=03:00:00
  
-mpirun  -$TMPDIR/machines -np $NSLOTS ./myjob</code>+mpirun -machinefile $TMPDIR/machines -np $NSLOTS ./myjob</code>
  
  
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   - Delete Jobs: <code>$ qdel <job_id></code>   - Delete Jobs: <code>$ qdel <job_id></code>
   - View all jobs in the queue: <code>$ qstat -u \*</code>   - View all jobs in the queue: <code>$ qstat -u \*</code>
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 +For advanced topics see also [[doku:advanced_topics|Sun grid engine (SGE)]].
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  • doku/vsc1quickstart.1407488745.txt.gz
  • Last modified: 2014/08/08 09:05
  • by jz