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- 05_user_software @pandoc:introduction-to-mul-cluster:01_introduction
- t ===== ==== Restarting a calculation ==== To restart a fluent job, you can read in the latest data fil... ===== ABAQUS 2016 ===== ==== Checkpointing and restart ==== Users sometimes find that their jobs take l... -in checkpointing function. This will create a restart file (.res file extension) from which a job that is killed can be restarted. - Activate the restart feature by adding the line: <code> *restart, wri
- 07_graphical_apps @pandoc:introduction-to-mul-cluster:01_introduction
- ] slides for more technical details ---- ===== start VNC desktop ===== * start VNC server (e.g. on login node 1): <code> vncserver -geometry 1920x1080 -d... t/sw/x86_64/generic/abaqus/Commands/abq2017 xpra start \ --daemon=no \ --exit-with-children=yes \ --start-child="$abq cae -mesa" </code> ---- ===== Job
- node_access_job_control @pandoc:introduction-to-vsc:06_node_access_job_control
- ====== Interactive jobs: salloc ====== <HTML><ol start="2" style="list-style-type: decimal;"></HTML> <HT... ROR_USER_GROUP=220 ERROR_USER_HOME=221 ERROR_GPFS_START=228 ERROR_GPFS_MOUNT=229 ERROR_GPFS_UNMOUNT=230 <... sacct -j 409878 -o jobid,jobname,cluster,nodelist,Start,End,cputime,cputimeraw,ncpus,qos,account,ExitCode... JobName Cluster NodeList Start End CPUTime CPUTimeRAW NC
- slurm @pandoc:introduction-to-vsc:05_submitting_batch_jobs
- html>(last update 2017-10-09 by ms). ==== Quickstart ==== script [[examples/job-quickstart.sh|examples/05_submitting_batch_jobs/job-quickstart.sh]]: <code> #!/bin/bash #SBATCH -J h5test #SBATCH ... any:<job_id> srun ./my_program </code> <HTML><ol start="3" style="list-style-type: decimal;"></HTML> <HT
- 04_slurm @pandoc:introduction-to-mul-cluster:01_introduction
- USER GROUP PARTITION PRIORITY START_TIME NAME NODES NODELIST STATE 555 us... ask will be treated as a seperate job * example start=1, end=30, stepwidth=7: <code> #!/bin/sh #SBATCH... any:<job_id> srun ./my_program </code> <HTML><ol start="3" style="list-style-type: decimal;"></HTML> <HT
- git @pandoc:git:01_general
- kflow 2 ==== Combined like this is a good way to start working: * Start by syncing the progress of upstream <code bash> git checkout master git pull origi
- 01_install_and_recovery @pandoc:introduction-to-mul-cluster:02_slurm
- mpty) ===== update procedure ===== * first: restart slurmdb * second: restart slurmctld * third: slurmd on nodes * db consistency +/- two version numb
- storage_infrastructure @pandoc:introduction-to-vsc:08_storage_infrastructure
- corresponding slurm-*.out files </code> <HTML><ol start="2" style="list-style-type: lower-alpha;"></HTML>... orresponding slurm-*.out files </code> <HTML><ol start="2" style="list-style-type: lower-alpha;"></HTML>
- 01_install_and_recovery @pandoc:slurm:01_install
- mpty) ===== update procedure ===== * first: restart slurmdb * second: restart slurmctld * third: slurmd on nodes * db consistency +/- two version numb
- 01_introduction @pandoc:introduction-to-mul-cluster:01_introduction
- et locale environment variables on startup” and restart the terminal. ---- ===== Filesystems ===== We
- 03_node_partitions @pandoc:introduction-to-mul-cluster:02_slurm
- adding nodes needs: <code> service slurmctld restart </code> ===== slurm.conf: adding nodes =====
- 05_commands @pandoc:introduction-to-mul-cluster:02_slurm
- == <code> scontrol create reservation starttime=$START \ endtime=$END \ partitionname=$P
- connecting_to_vsc @pandoc:introduction-to-vsc:02_connecting_to_vsc
- node}} <code bash> [...]$ eval `ssh-agent` # start ssh agent [...]$ echo $SSH_AGENT_SOCK # check if
- connecting_to_vsc-20200925 @pandoc:introduction-to-vsc:02_connecting_to_vsc
- DEMO: <code bash> [...]$ eval `ssh-agent` # start ssh agent [...]$ echo $SSH_AGENT_SOCK # check if
- 01_singularity @pandoc:introduction-to-vsc:14_singularity
- [[https://sylabs.io/guides/2.6/user-guide/quick_start.html|https:%%//%%sylabs.io/guides]] Singularity