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slurm_sacct @doku: 15 Hits, Last modified: 15 months ago; ber of nodes per job and the time difference from start to end {{ :doku:corehours.png?500 |}} === Usage of the script === You may give start time ''-S ...'' and end time ''-E ...''. Default start time is the start of VSC-3 (even on VSC4), 2015-04-01T00:00:00, default end time is today. Instead you m
05_user_software @pandoc:introduction-to-mul-cluster:01_introduction: 11 Hits, Last modified: 4 years ago; t ===== ==== Restarting a calculation ==== To restart a fluent job, you can read in the latest data fil... ===== ABAQUS 2016 ===== ==== Checkpointing and restart ==== Users sometimes find that their jobs take l... -in checkpointing function. This will create a restart file (.res file extension) from which a job that is killed can be restarted. - Activate the restart feature by adding the line: <code> *restart, wri
bigdata @doku: 8 Hits, Last modified: 12 months ago; rt PDSH_RCMD_TYPE=ssh prolog_create_key.sh . vsc_start_hadoop.sh . vsc_start_spark.sh spark-submit --master yarn --deploy-mode client --num-executors 140 \ ... etup scripts which create temporary ssh keys, and start Hadoop and Spark services in user context on the nodes of the job, * commands to start our job with '''spark-submit''', and * a script
jupyterhub @doku: 6 Hits, Last modified: 5 months ago; memory suited to your requirements.</box> ===== Start a new Jupyter server ===== choose a profile: *... unning time. After everything is selected, press start - your server will start and show you the JupyterLab interface or the simpler Notebook interface. In bot... hoose the appropriate type. The new notebook will start in a new browser tab. It will show up as untitled
07_graphical_apps @pandoc:introduction-to-mul-cluster:01_introduction: 6 Hits, Last modified: 4 years ago; ] slides for more technical details ---- ===== start VNC desktop ===== * start VNC server (e.g. on login node 1): <code> vncserver -geometry 1920x1080 -d... t/sw/x86_64/generic/abaqus/Commands/abq2017 xpra start \ --daemon=no \ --exit-with-children=yes \ --start-child="$abq cae -mesa" </code> ---- ===== Job
node_access_job_control @pandoc:introduction-to-vsc:06_node_access_job_control: 6 Hits, Last modified: 4 years ago; ====== Interactive jobs: salloc ====== <HTML><ol start="2" style="list-style-type: decimal;"></HTML> <HT... ROR_USER_GROUP=220 ERROR_USER_HOME=221 ERROR_GPFS_START=228 ERROR_GPFS_MOUNT=229 ERROR_GPFS_UNMOUNT=230 <... sacct -j 409878 -o jobid,jobname,cluster,nodelist,Start,End,cputime,cputimeraw,ncpus,qos,account,ExitCode... JobName Cluster NodeList Start End CPUTime CPUTimeRAW NC
python @doku: 5 Hits, Last modified: 5 weeks ago; ady widely known. Have a look at the new **quickstart guide** below or the material from the python4hpc... but kept on this page for reference. ===== Quickstart: Using Python with Conda ===== To install a new environment, start with creating an **environment yaml file** and st... hon --version Python 3.10.11 </code> You can now start developing and even use the environment in a slur
slurm @pandoc:introduction-to-vsc:05_submitting_batch_jobs: 4 Hits, Last modified: 4 years ago; html>(last update 2017-10-09 by ms). ==== Quickstart ==== script [[examples/job-quickstart.sh|examples/05_submitting_batch_jobs/job-quickstart.sh]]: <code> #!/bin/bash #SBATCH -J h5test #SBATCH ... any:<job_id> srun ./my_program </code> <HTML><ol start="3" style="list-style-type: decimal;"></HTML> <HT
ansys @doku: 3 Hits, Last modified: 26 hours ago; rovide a test file for Fluent; instructions: - Start Ansys Fluent and open the .cas file. - Write a ... e job script generates the appropriate command to start the calculation with Fluent. ---- ===== License... ---- ===== Restarting a calculation ===== To restart a fluent job, you can read in the latest data fil
forge @doku: 3 Hits, Last modified: 18 months ago; ( a second terminal will be needed to actually start the debug session ) --></html> <html><!-- my_u... ( a second terminal will be needed to actually start the debug session ) my_uid@l34$ ssh n305-0... it and click Run and the usual debug session will start ) ==== Further Reading: ==== ''/opt/sw/x86_6
matlab @doku: 3 Hits, Last modified: 3 months ago; ====== Matlab VSC ====== ===== Quickstart: Run Matlab Task from command line ===== Generate a matlab pa... nfiguration ==== After logging into the cluster, start MATLAB. On the Home tab, click Parallel > Discov... mple(iter) if nargin==0 iter = 8; end disp('Start sim') t0 = tic; parfor idx = 1:iter A(idx) =
papi_ll_c @doku: 3 Hits, Last modified: 8 years ago; cyc0 = PAPI_get_real_cyc(); // PAPI Counting Start if (PAPI_start(eventset) != PAPI_OK) { printf("PAPI start error !\n"); exit(996); } //*** Here fo
papi_ll_fortran @doku: 3 Hits, Last modified: 8 years ago; _real_cyc(c0) C C PAPI Counting Start C call PAPIF_start(evntst, check) if (check.ne.PAPI_OK) then write(6,*) 'PAPI start error !' write(6,*) '03 check:',
paraview @doku: 3 Hits, Last modified: 7 years ago; jobs, then the time until this job would actually start can be used by jobs which fit into the remaining ... n the job's master node. Then on the master node start the paraview server with the following command: <... client can be connected to this server process. Start the client on your workstation (e.g.): <code># pa
projects @doku: 3 Hits, Last modified: 2 months ago; new parent project. This is usually done when you start a new cooporation for an organization, or if you ... new project part and enter the requirements: * Start date is automatically the current date - can be c... s are created, these can log into the cluster and start working on the project.** ===== Project changes
smrtanalysis @doku: 3 Hits, Last modified: 7 years ago
vsc1 @doku: 3 Hits, Last modified: 10 years ago
04_slurm @pandoc:introduction-to-mul-cluster:01_introduction: 3 Hits, Last modified: 4 years ago
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backup @doku: 2 Hits, Last modified: 3 years ago
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newsletter20100610 @doku: 2 Hits, Last modified: 9 years ago
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slurm1 @doku: 2 Hits, Last modified: 5 years ago
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vsc2quickstart @doku: 2 Hits, Last modified: 10 years ago
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git @pandoc:git:01_general: 2 Hits, Last modified: 4 years ago
01_install_and_recovery @pandoc:introduction-to-mul-cluster:02_slurm: 2 Hits, Last modified: 4 years ago
storage_infrastructure @pandoc:introduction-to-vsc:08_storage_infrastructure: 2 Hits, Last modified: 4 years ago
01_install_and_recovery @pandoc:slurm:01_install: 2 Hits, Last modified: 4 years ago
start: 1 Hits, Last modified: 4 days ago
abaqus6 @doku: 1 Hits, Last modified: 9 years ago
advanced_topics @doku: 1 Hits, Last modified: 10 years ago
ai_intro @doku: 1 Hits, Last modified: 6 weeks ago
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desmond @doku: 1 Hits, Last modified: 11 years ago
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large @doku: 1 Hits, Last modified: 12 years ago
mac @doku: 1 Hits, Last modified: 9 years ago
newsletter20101008 @doku: 1 Hits, Last modified: 9 years ago
papi_hl_fortran @doku: 1 Hits, Last modified: 8 years ago
r-project @doku: 1 Hits, Last modified: 8 years ago
rstat @doku: 1 Hits, Last modified: 3 years ago
scalapack @doku: 1 Hits, Last modified: 12 years ago
sequential-codes @doku: 1 Hits, Last modified: 11 years ago
sge @doku: 1 Hits, Last modified: 8 years ago
slurm_multisite_admin @doku: 1 Hits, Last modified: 10 months ago
testquickstart @doku: 1 Hits, Last modified: 10 years ago
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vnc @doku: 1 Hits, Last modified: 6 years ago
vsc2 @doku: 1 Hits, Last modified: 2 years ago
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vsc5quickstart @doku: 1 Hits, Last modified: 11 months ago
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syntax @wiki: 1 Hits, Last modified: 2 months ago
manual_jupyter_server @doku:jupyter: 1 Hits, Last modified: 10 months ago
dask @doku:jupyterhub: 1 Hits, Last modified: 12 months ago
01_introduction @pandoc:introduction-to-mul-cluster:01_introduction: 1 Hits, Last modified: 4 years ago
03_node_partitions @pandoc:introduction-to-mul-cluster:02_slurm: 1 Hits, Last modified: 4 years ago
05_commands @pandoc:introduction-to-mul-cluster:02_slurm: 1 Hits, Last modified: 6 years ago
connecting_to_vsc @pandoc:introduction-to-vsc:02_connecting_to_vsc: 1 Hits, Last modified: 13 months ago
connecting_to_vsc-20200925 @pandoc:introduction-to-vsc:02_connecting_to_vsc: 1 Hits, Last modified: 4 years ago
01_singularity @pandoc:introduction-to-vsc:14_singularity: 1 Hits, Last modified: 4 years ago
markdown @pandoc:markdown:01_general: 1 Hits, Last modified: 4 years ago
02_node_partitions @pandoc:slurm:02_setup: 1 Hits, Last modified: 4 years ago
02_commands @pandoc:slurm:03_jobsubmission: 1 Hits, Last modified: 5 years ago

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