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slurm_sacct @doku: 16 Hits, Last modified: 15 months ago; ber of nodes per job and the time difference from start to end {{ :doku:corehours.png?500 |}} === Usage of the script === You may give start time ''-S ...'' and end time ''-E ...''. Default start time is the start of VSC-3 (even on VSC4), 2015-04-01T00:00:00, default end time is today. Instead you m
bigdata @doku: 14 Hits, Last modified: 12 months ago; rt PDSH_RCMD_TYPE=ssh prolog_create_key.sh . vsc_start_hadoop.sh . vsc_start_spark.sh spark-submit --master yarn --deploy-mode client --num-executors 140 \ ... In this slurm script we have * slurm commands, starting with #SBATCH to set the job name, the maximum ... etup scripts which create temporary ssh keys, and start Hadoop and Spark services in user context on the
05_user_software @pandoc:introduction-to-mul-cluster:01_introduction: 14 Hits, Last modified: 4 years ago; sh </code> ---- ===== COMSOL 5.2a ===== ==== Restarting jobs ==== To continue your calculation from t... h </code> ---- ===== ANSYS Fluent ===== ==== Restarting a calculation ==== To restart a fluent job, you can read in the latest data file: <code> # read cas... ===== ABAQUS 2016 ===== ==== Checkpointing and restart ==== Users sometimes find that their jobs take l
jupyterhub @doku: 13 Hits, Last modified: 5 months ago; rtant Information: Resource Allocation ===== The started Jupyter Server instance runs on a separate hard... memory suited to your requirements.</box> ===== Start a new Jupyter server ===== choose a profile: *... unning time. After everything is selected, press start - your server will start and show you the JupyterLab interface or the simpler Notebook interface. In bot
paraview @doku: 10 Hits, Last modified: 7 years ago; ibed is for use with a paraview server (pvserver) started via the Sun Grid Engine (SGE) and a paraview cl... raview) running on a remote workstation. Paraview starts a server process on one of the compute nodes of ... y bash</code> Now an interactive session will be started on the master node for this job. Assuming the m... jobs, then the time until this job would actually start can be used by jobs which fit into the remaining
node_access_job_control @pandoc:introduction-to-vsc:06_node_access_job_control: 10 Hits, Last modified: 4 years ago; ====== Interactive jobs: salloc ====== <HTML><ol start="2" style="list-style-type: decimal;"></HTML> <HT... ROR_USER_GROUP=220 ERROR_USER_HOME=221 ERROR_GPFS_START=228 ERROR_GPFS_MOUNT=229 ERROR_GPFS_UNMOUNT=230 <... NING Reason=None Dependency=(null) Requeue=0 Restarts=0 BatchFlag=0 Reboot=0 ExitCode=0:0 RunTime=0... -12T15:50:44 AccrueTime=2020-10-12T15:50:44 StartTime=2020-10-12T15:51:07 EndTime=2020-10-22T15:51:
python @doku: 9 Hits, Last modified: 6 weeks ago; ady widely known. Have a look at the new **quickstart guide** below or the material from the python4hpc... but kept on this page for reference. ===== Quickstart: Using Python with Conda ===== To install a new environment, start with creating an **environment yaml file** and st... hon --version Python 3.10.11 </code> You can now start developing and even use the environment in a slur
07_graphical_apps @pandoc:introduction-to-mul-cluster:01_introduction: 8 Hits, Last modified: 4 years ago; ] slides for more technical details ---- ===== start VNC desktop ===== * start VNC server (e.g. on login node 1): <code> vncserver -geometry 1920x1080 -d... fork of Gnome 2) is preconfigured in ''%%~/.vnc/xstartup%%'' * connect your VNC-viewer to address ''%%... on same compute nodes as application * it is started together with application in job script * e
slurm @doku: 7 Hits, Last modified: 3 months ago; mber 2 and 3 from the set of four (where the list starts with node number 0), hence a combination of -N -... termination of each task, the consecutive task is started. <code> #!/bin/bash #SBATCH -J TEST ... ############################## Here starts the parallelization while (("$... de> (The SLURM inherent command //#SBATCH --array starting_value-end_value:stepwidth// does not provide t
slurm1 @doku: 7 Hits, Last modified: 5 years ago; mber 2 and 3 from the set of four (where the list starts with node number 0), hence a combination of -N -... termination of each task, the consecutive task is started. <code> #!/bin/bash #SBATCH -J TEST ... ############################## Here starts the parallelization while (("$... de> (The SLURM inherent command //#SBATCH --array starting_value-end_value:stepwidth// does not provide t
linux-101 @pandoc:linux-wochen-wien:linux-101: 6 Hits, Last modified: 4 years ago; ==== GNU ==== {{.:gnu.svg?0x200}} > In 1984 RMS starts the **GNU** project, with the goal to provide a ... ====== ==== Filesystem 101 ==== - Everything starts at the root * the root is a directory * ... ep inside it - that ends in ''%%.txt%%'' - or starts with ''%%log_%%'' - and is an ordinary file ... sfy our needs: === * nano * vim === Common starting point === <code bash> nano filename </code> <
ansys @doku: 5 Hits, Last modified: 44 hours ago; rovide a test file for Fluent; instructions: - Start Ansys Fluent and open the .cas file. - Write a ... is initialised to zero and then the iteration is started. ---- ===== Job script ===== When executing S... e job script generates the appropriate command to start the calculation with Fluent. ---- ===== License... code> sbatch fluent_run.sh </code> ---- ===== Restarting a calculation ===== To restart a fluent job,
04_slurm @pandoc:introduction-to-mul-cluster:01_introduction: 5 Hits, Last modified: 4 years ago; USER GROUP PARTITION PRIORITY START_TIME NAME NODES NODELIST STATE 555 us... NING Reason=None Dependency=(null) Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0 RunTime=0... 1-12T11:58:47 EligibleTime=2018-01-12T11:58:47 StartTime=2018-01-12T11:58:47 EndTime=2018-01-19T11:58:... ask will be treated as a seperate job * example start=1, end=30, stepwidth=7: <code> #!/bin/sh #SBATCH
gaussian09 @doku: 4 Hits, Last modified: 2 years ago; in an optimization (i.e., include later restarts) can be reduced. This is sometimes useful ... ergies which are independent of the choice of starting orbitals. Gradients with BD still require and... iterations and which fail to finish are now restartable. 30. A bug in reading ECPs with ONIOM when t... heckpoint file of the current job step at the start of the job step. This allows data to be picke
large @doku: 4 Hits, Last modified: 12 years ago; res and Intel MPI 4.0.3 run into a problem in the startup phase. As a result not all nodes will start the user job properly. To overcome this startup problem we recommend setting the environment variable<co... ever, Intel MPI 4.0.1 has poor performance in the startup phase if many cores are requested whereas the
matlab @doku: 4 Hits, Last modified: 3 months ago
vsc1 @doku: 4 Hits, Last modified: 10 years ago
slurm @pandoc:introduction-to-vsc:05_submitting_batch_jobs: 4 Hits, Last modified: 4 years ago
markdown @pandoc:markdown:01_general: 4 Hits, Last modified: 4 years ago
backup @doku: 3 Hits, Last modified: 3 years ago
forge @doku: 3 Hits, Last modified: 18 months ago
outofmemory @doku: 3 Hits, Last modified: 7 years ago
papi_ll_c @doku: 3 Hits, Last modified: 8 years ago
papi_ll_fortran @doku: 3 Hits, Last modified: 8 years ago
projects @doku: 3 Hits, Last modified: 2 months ago
sge @doku: 3 Hits, Last modified: 8 years ago
smrtanalysis @doku: 3 Hits, Last modified: 7 years ago
testquickstart @doku: 3 Hits, Last modified: 10 years ago
vsc2 @doku: 3 Hits, Last modified: 2 years ago
vsc2quickstart @doku: 3 Hits, Last modified: 10 years ago
vsc3_gpu @doku: 3 Hits, Last modified: 6 years ago
welcome @wiki: 3 Hits, Last modified: 2 months ago
manual_jupyter_server @doku:jupyter: 3 Hits, Last modified: 10 months ago
dask @doku:jupyterhub: 3 Hits, Last modified: 12 months ago
git @pandoc:git:01_general: 3 Hits, Last modified: 4 years ago
utilities @pandoc:introduction-to-vsc:03_linux_primer: 3 Hits, Last modified: 4 years ago
sidebar: 2 Hits, Last modified: 8 weeks ago
desmond @doku: 2 Hits, Last modified: 11 years ago
gpaw @doku: 2 Hits, Last modified: 10 years ago
mac @doku: 2 Hits, Last modified: 9 years ago
machine_file @doku: 2 Hits, Last modified: 10 years ago
monitoring @doku: 2 Hits, Last modified: 14 months ago
newsletter20100610 @doku: 2 Hits, Last modified: 9 years ago
papi_hl_fortran @doku: 2 Hits, Last modified: 8 years ago
rstat @doku: 2 Hits, Last modified: 3 years ago
slurm_multisite_admin @doku: 2 Hits, Last modified: 10 months ago
teststart @doku: 2 Hits, Last modified: 10 years ago
usif @doku: 2 Hits, Last modified: 7 years ago
xeonphi @doku: 2 Hits, Last modified: 10 years ago
syntax @wiki: 2 Hits, Last modified: 2 months ago
backup_on_vsc3 @pandoc:arge_storage:05_backup_on_vsc3: 2 Hits, Last modified: 4 years ago
01_introduction @pandoc:introduction-to-mul-cluster:01_introduction: 2 Hits, Last modified: 4 years ago
01_install_and_recovery @pandoc:introduction-to-mul-cluster:02_slurm: 2 Hits, Last modified: 4 years ago
05_commands @pandoc:introduction-to-mul-cluster:02_slurm: 2 Hits, Last modified: 6 years ago
storage_infrastructure @pandoc:introduction-to-vsc:08_storage_infrastructure: 2 Hits, Last modified: 4 years ago
01_install_and_recovery @pandoc:slurm:01_install: 2 Hits, Last modified: 4 years ago
02_commands @pandoc:slurm:03_jobsubmission: 2 Hits, Last modified: 5 years ago
start: 1 Hits, Last modified: 5 days ago
abaqus6 @doku: 1 Hits, Last modified: 9 years ago
advanced_topics @doku: 1 Hits, Last modified: 10 years ago
ai_intro @doku: 1 Hits, Last modified: 6 weeks ago
cfd @doku: 1 Hits, Last modified: 4 months ago
comsol52 @doku: 1 Hits, Last modified: 3 years ago
gromacs @doku: 1 Hits, Last modified: 5 months ago
mpiversion @doku: 1 Hits, Last modified: 7 years ago
newsletter20101008 @doku: 1 Hits, Last modified: 9 years ago
prolog @doku: 1 Hits, Last modified: 12 years ago
r-project @doku: 1 Hits, Last modified: 8 years ago
relion @doku: 1 Hits, Last modified: 10 years ago
scalapack @doku: 1 Hits, Last modified: 12 years ago
sequential-codes @doku: 1 Hits, Last modified: 11 years ago
seriell2par @doku: 1 Hits, Last modified: 3 years ago
slurm_multisite @doku: 1 Hits, Last modified: 16 months ago
time @doku: 1 Hits, Last modified: 9 years ago
vnc @doku: 1 Hits, Last modified: 6 years ago
vsc3_queue @doku: 1 Hits, Last modified: 18 months ago
vsc4_queue @doku: 1 Hits, Last modified: 39 hours ago
vsc5quickstart @doku: 1 Hits, Last modified: 12 months ago
vsc5_queue @doku: 1 Hits, Last modified: 39 hours ago
03_node_partitions @pandoc:introduction-to-mul-cluster:02_slurm: 1 Hits, Last modified: 4 years ago
connecting_to_vsc @pandoc:introduction-to-vsc:02_connecting_to_vsc: 1 Hits, Last modified: 13 months ago
connecting_to_vsc-20200925 @pandoc:introduction-to-vsc:02_connecting_to_vsc: 1 Hits, Last modified: 4 years ago
editors @pandoc:introduction-to-vsc:03_linux_primer: 1 Hits, Last modified: 4 years ago
linuxprimer @pandoc:introduction-to-vsc:03_linux_primer: 1 Hits, Last modified: 4 years ago
01_singularity @pandoc:introduction-to-vsc:14_singularity: 1 Hits, Last modified: 4 years ago
storage_technologies @pandoc:parallel-io:02_storage_technologies: 1 Hits, Last modified: 4 years ago
storage_technologies @pandoc:parallell-io:02_storage_technologies: 1 Hits, Last modified: 6 years ago
02_node_partitions @pandoc:slurm:02_setup: 1 Hits, Last modified: 4 years ago

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