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slurm_sacct @doku: 15 Hits, Last modified: 3 weeks ago; ber of nodes per job and the time difference from start to end {{ :doku:corehours.png?500 |}} === Usage of the script === You may give start time ''-S ...'' and end time ''-E ...''. Default start time on the clusters is the start of VSC-3, 2015-04-01T00:00:00, default end time is today. Instead you
bigdata @doku: 8 Hits, Last modified: 3 weeks ago; rt PDSH_RCMD_TYPE=ssh prolog_create_key.sh . vsc_start_hadoop.sh . vsc_start_spark.sh spark-submit --master yarn --deploy-mode client --num-executors 140 \ ... etup scripts which create temporary ssh keys, and start Hadoop and Spark services in user context on the nodes of the job, * commands to start our job with '''spark-submit''', and * a script
jupyterhub @doku: 6 Hits, Last modified: 3 weeks ago; memory suited to your requirements.</box> ===== Start a new Jupyter server ===== choose a profile: *... unning time. After everything is selected, press start - your server will start and show you the JupyterLab interface or the simpler Notebook interface. In bot... hoose the appropriate type. The new notebook will start in a new browser tab. It will show up as untitled
07_graphical_apps @pandoc:introduction-to-mul-cluster:01_introduction: 6 Hits, Last modified: 4 years ago; ] slides for more technical details ---- ===== start VNC desktop ===== * start VNC server (e.g. on login node 1): <code> vncserver -geometry 1920x1080 -d... t/sw/x86_64/generic/abaqus/Commands/abq2017 xpra start \ --daemon=no \ --exit-with-children=yes \ --start-child="$abq cae -mesa" </code> ---- ===== Job
node_access_job_control @pandoc:introduction-to-vsc:06_node_access_job_control: 6 Hits, Last modified: 4 years ago; ====== Interactive jobs: salloc ====== <HTML><ol start="2" style="list-style-type: decimal;"></HTML> <HT... ROR_USER_GROUP=220 ERROR_USER_HOME=221 ERROR_GPFS_START=228 ERROR_GPFS_MOUNT=229 ERROR_GPFS_UNMOUNT=230 <... sacct -j 409878 -o jobid,jobname,cluster,nodelist,Start,End,cputime,cputimeraw,ncpus,qos,account,ExitCode... JobName Cluster NodeList Start End CPUTime CPUTimeRAW NC
forge @doku: 3 Hits, Last modified: 3 weeks ago; # a second terminal will be needed to actually start the debug session my_uid@l35$ cd wherever/my/ap... # a second terminal will be needed to actually start the debug session my_uid@l34$ ssh n305-044 ... it and click Run and the usual debug session will start ) </code> ==== Further Reading: ==== ''/opt/s
papi_ll_c @doku: 3 Hits, Last modified: 8 years ago; cyc0 = PAPI_get_real_cyc(); // PAPI Counting Start if (PAPI_start(eventset) != PAPI_OK) { printf("PAPI start error !\n"); exit(996); } //*** Here fo
papi_ll_fortran @doku: 3 Hits, Last modified: 8 years ago; _real_cyc(c0) C C PAPI Counting Start C call PAPIF_start(evntst, check) if (check.ne.PAPI_OK) then write(6,*) 'PAPI start error !' write(6,*) '03 check:',
paraview @doku: 3 Hits, Last modified: 3 weeks ago; jobs, then the time until this job would actually start can be used by jobs which fit into the remaining ... n the job's master node. Then on the master node start the paraview server with the following command: <... client can be connected to this server process. Start the client on your workstation (e.g.): <code># pa
python @doku: 3 Hits, Last modified: 3 weeks ago; n with Conda ===== To install a new environment, start with creating an **environment yaml file** and st... hon --version Python 3.10.11 </code> You can now start developing and even use the environment in a slur... you up and running in no time. Note: Before you start, make sure that you have loaded the python versio
smrtanalysis @doku: 3 Hits, Last modified: 8 years ago; s_HOME ./smrtanalysis/admin/bin/smrtportald-initd start export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${SMRTAna... e>salloc -p mem_0128 --qos=normal_0128</code> - start server on allocated: <code>srun $SMRTAnalysis_HOME/smrtanalysis/admin/bin/smrtportald-initd start</code> - create SSH tunnel * on the logi
vsc1 @doku: 3 Hits, Last modified: 11 years ago; ===== User Documentation ===== *[[vsc1#Quick Start|Quick Start]] *[[doku:advanced_sge|Advanced SGE topics]] *[[software_vsc1|Available software packa... *[[doku:xeonphi|Using Intel Xeon Phi]] ==== Quick Start ==== - Log in to your university's designated l
04_slurm @pandoc:introduction-to-mul-cluster:01_introduction: 3 Hits, Last modified: 4 years ago; USER GROUP PARTITION PRIORITY START_TIME NAME NODES NODELIST STATE 555 us... ask will be treated as a seperate job * example start=1, end=30, stepwidth=7: <code> #!/bin/sh #SBATCH... any:<job_id> srun ./my_program </code> <HTML><ol start="3" style="list-style-type: decimal;"></HTML> <HT
backup @doku: 2 Hits, Last modified: 5 days ago; p_local.sh bash rsyncd_setup_local.sh </code> - start the rsync daemon with the 'start_rsync' command specified in the 'alias' on the remote machine (**!!! re
matlab @doku: 2 Hits, Last modified: 3 weeks ago; nfiguration ==== After logging into the cluster, start MATLAB. On the Home tab, click Parallel > Discov... mple(iter) if nargin==0 iter = 8; end disp('Start sim') t0 = tic; parfor idx = 1:iter A(idx) =
monitoring @doku: 2 Hits, Last modified: 9 days ago
newsletter20100610 @doku: 2 Hits, Last modified: 9 years ago
projects @doku: 2 Hits, Last modified: 44 hours ago
slurm @doku: 2 Hits, Last modified: 2 weeks ago
slurm1 @doku: 2 Hits, Last modified: 5 years ago
usif @doku: 2 Hits, Last modified: 7 years ago
vsc3_gpu @doku: 2 Hits, Last modified: 6 years ago
welcome @wiki: 2 Hits, Last modified: 6 months ago
git @pandoc:git:01_general: 2 Hits, Last modified: 4 years ago
storage_infrastructure @pandoc:introduction-to-vsc:08_storage_infrastructure: 2 Hits, Last modified: 4 years ago
start: 1 Hits, Last modified: 3 months ago
advanced_topics @doku: 1 Hits, Last modified: 10 years ago
ai_intro @doku: 1 Hits, Last modified: 2 months ago
ansys @doku: 1 Hits, Last modified: 6 weeks ago
cfd @doku: 1 Hits, Last modified: 3 weeks ago
desmond @doku: 1 Hits, Last modified: 12 years ago
gaussian09 @doku: 1 Hits, Last modified: 2 weeks ago
gpaw @doku: 1 Hits, Last modified: 10 years ago
large @doku: 1 Hits, Last modified: 13 years ago
login @doku: 1 Hits, Last modified: 44 hours ago
newsletter20101008 @doku: 1 Hits, Last modified: 9 years ago
papi_hl_fortran @doku: 1 Hits, Last modified: 8 years ago
r-project @doku: 1 Hits, Last modified: 8 years ago
rstat @doku: 1 Hits, Last modified: 3 years ago
scalapack @doku: 1 Hits, Last modified: 13 years ago
sequential-codes @doku: 1 Hits, Last modified: 11 years ago
sge @doku: 1 Hits, Last modified: 8 years ago
slurm_multisite_admin @doku: 1 Hits, Last modified: 13 months ago
testquickstart @doku: 1 Hits, Last modified: 10 years ago
teststart @doku: 1 Hits, Last modified: 10 years ago
time @doku: 1 Hits, Last modified: 9 years ago
vnc @doku: 1 Hits, Last modified: 6 years ago
vsc2 @doku: 1 Hits, Last modified: 3 years ago
vsc2quickstart @doku: 1 Hits, Last modified: 10 years ago
vsc3_queue @doku: 1 Hits, Last modified: 21 months ago
vsc4_queue @doku: 1 Hits, Last modified: 9 weeks ago
vsc5quickstart @doku: 1 Hits, Last modified: 15 months ago
vsc5_queue @doku: 1 Hits, Last modified: 8 weeks ago
syntax @wiki: 1 Hits, Last modified: 6 months ago
manual_jupyter_server @doku:jupyter: 1 Hits, Last modified: 13 months ago
dask @doku:jupyterhub: 1 Hits, Last modified: 15 months ago
05_user_software @pandoc:introduction-to-mul-cluster:01_introduction: 1 Hits, Last modified: 4 years ago
05_commands @pandoc:introduction-to-mul-cluster:02_slurm: 1 Hits, Last modified: 6 years ago
connecting_to_vsc @pandoc:introduction-to-vsc:02_connecting_to_vsc: 1 Hits, Last modified: 16 months ago
connecting_to_vsc-20200925 @pandoc:introduction-to-vsc:02_connecting_to_vsc: 1 Hits, Last modified: 4 years ago
slurm @pandoc:introduction-to-vsc:05_submitting_batch_jobs: 1 Hits, Last modified: 4 years ago
01_singularity @pandoc:introduction-to-vsc:14_singularity: 1 Hits, Last modified: 4 years ago
markdown @pandoc:markdown:01_general: 1 Hits, Last modified: 4 years ago
02_commands @pandoc:slurm:03_jobsubmission: 1 Hits, Last modified: 5 years ago

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